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Tuesday, 06.18.2013, 12:53am (GMT-7)
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Creating human ESCs by nucleus transfer ; Genomes can be lean and mean ; Single cell techniques isolated resident T cells in asymptomatic Herpes infection ; The shaping and functional consequences of the microRNA landscape in breast cancer ; Author File: Nathan Shaner, the Scintillon Institute
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Have you done these types of NextGen sequencing, either internally, at Core, or through commercial service?
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Video-rate nanoscopy using sCMOS camera–specific single-molecule localization algorithms
Wednesday, 05.29.2013, 04:38pm

Algorithms that account for and overcome the intrinsic pixel-dependent readout noise from scientific complementary metal-oxide semiconductor (sCMOS) cameras prevent localization artifacts and avoid substantial compromises in localization uncertainty in single-molecule imaging. When combined with multi-emitter fitting, sCMOS cameras allow video-rate single-molecule switching nanoscopy.

Comparative analysis of RNA sequencing methods for degraded or low-input samples    Creating human ESCs by nucleus transfer
 
 
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Conductivity of individual particles measured by a microscopic four-point-probe method
Monday, 06.17.2013, 09:32am
We introduce a technique for measuring the conductivity of individual hybrid metal, semiconducting core-shell and full-metal conducting particles by a microscopic four-point probe (μ-4PP) method. The four-point probe geometry allows for minimizing contact resistances between electrodes and particles. By using a focused ion beam we fabricate platinum nanoleads between four microelectrodes on a silicon chip and an individual particle, and determine the particle's conductivity via sensitive current and voltage measurements. Up to sixteen particles can be taken up by each chip, which allows for multiple conductivity measurements by simply multiplexing the electric contacts connected to a multimeter. Although, for demonstration, we used full Au (conducting) and Ag-coated latex particles (semiconducting) of a few micrometers in diameter, the method can be applied to other types of conducting or semiconducting particles of different diameters.
A largely random AAV integration profile after LPLD gene therapy
[Report] Ice Shelf Melting Around Antarctica
   
Job Postings/Lab Visits/Vendor Shows
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Job Opening with Southern CA Biotechnology Center @ Miramar College
Tuesday, 05.21.2013, 09:36am
The new manager will coordinate and manage the operational functions related to grants and contracts of Career and Technical Education (CTE) Biotechnology HUB, and biotechnology center.
Biotech Employment Skills Training 2013 San Diego
Postdoc Scientist Position in San Diego
Using single cell technologies for functional studies
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Single cell techniques isolated resident T cells in asymptomatic Herpes infection
Thursday, 05.09.2013, 11:12am
Resident Tcells are oligoclonal with diverse usage of TCR variable-β genes, which differ from those commonly described for mucosa-associated invariant Tcells and natural killer Tcells.
Anatomical localization, gene expression profiling and functional characterization of adult human neck brown fat
Barcoding cells using cell-surface programmable DNA-binding domains
   
Camelid Antibodies
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Mouse platforms jostle for slice of humanized antibody market
Tuesday, 04.23.2013, 09:07am
The capability of full-sized llama antibodies played out in a project conducted by Eli Lilly. The llama platform generated more than a dozen unique antibodies, all hitting the desired epitope, whereas Lilly's in-house mouse platforms and phage libraries failed to come up with a single suitable antibody.
A roadmap to generate renewable protein binders to the human proteome
Something new under the skin
Imaging, Structure, and Optogenetics
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Video-rate nanoscopy using sCMOS camera–specific single-molecule localization algorithms
Friday, 05.31.2013, 10:54am
Algorithms that account for and overcome the intrinsic pixel-dependent readout noise from scientific complementary metal-oxide semiconductor (sCMOS) cameras prevent localization artifacts and avoid substantial compromises in localization uncertainty in single-molecule imaging. When combined with multi-emitter fitting, sCMOS cameras allow video-rate single-molecule switching nanoscopy.
Improved tools for the Brainbow toolbox
Real-time in vivo computed optical interferometric tomography
   
NexGen Sequencin, Epigenetics, and Editing
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Mutational heterogeneity in cancer and the search for new cancer-associated genes
Monday, 06.17.2013, 09:32am
Major international projects are underway that are aimed at creating a comprehensive catalogue of all the genes responsible for the initiation and progression of cancer.
Million veterans sequenced
Genomics: A gut prediction
RNAi miRNA Updates
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Control of metastatic progression by microRNA regulatory networks
Friday, 06.07.2013, 11:59am
Pencheva and Tavazoie discuss the recent advances in understanding how microRNAs control metastatic progression in cancer.
Control of metastatic progression by microRNA regulatory networks
The shaping and functional consequences of the microRNA landscape in breast cancer
   
FP Technologies and In Vivo Imaging
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[Report] Protein Equilibration Through Somatic Ring Canals in Drosophila
Friday, 05.24.2013, 02:34pm
Photoactivable green fluorescent protein (PAGFP) was used to track movement across intercellular canals.  Ring canals ensure that the haves share with their have-not neighbors.Authors: Peter F. McLean, Lynn Cooley
Author File: Nathan Shaner, the Scintillon Institute
In vivo three-photon microscopy of subcortical structures within an intact mouse brain
iPSC MSC ESC Differentiation
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Production of biallelic CMP-Neu5Ac hydroxylase knock-out pigs
Friday, 06.14.2013, 11:24pm
After the knock-out (KO) of α1,3 galactosyltransfease (Gal-T), the Hanganutziu-Deicher antigen became a major antigen of the "non-Gal antigen" that is implicated in subsequent xenograft rejection. For deletion of non-Gal antigen, we successfully produced zinc finger nuclease (ZFN)-mediated monoallelic/biallelic male and female CMP-N-acetylneuraminic acid hydroxylase (CMAH) KO miniature pigs: the efficiency of the gene targeting (41.7%) was higher when donor DNA was used with the ZFN than those of ZFN alone (9.1%). Monoallelic KO pigs had no integration of exogenous DNA into their genome, indicating that this technique would provide a new avenue to reduce the risk of antibiotics resistance when organs from genetically modified pigs are transplanted into patients. Until now, both monoallelic and biallelic CMAH KO pigs are healthy and show no sign of abnormality and off-target mutations. Therefore, these CMAH null pigs on the Gal-T KO background could serve as an important model for the xenotransplantation.
Stem cells: Regulation by alternative splicing
Large non-coding RNA in pluripotency
   
News Release from Other Organizations
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SABPA Event Tomorrow: Paving the Path to Success
Friday, 06.07.2013, 12:00pm
There will also be an exciting drug discovery panel representing elite local companies with drugs that have recently gained FDA approvals to showcase San Diego's drug discovery success stories. The program is guaranteed to generate sizzling discussion, stimulate new ideas, and fuel renewed enthusiasm of investing in San Diego biotech industry.
Early Bird registration ends by 05/31 for San Diego BioPharma Conference
BUILT TO LAST, NOT FOR THE EXIT
Photosynthesis and Green Energy
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Making fuel from engineered bacteria
Friday, 04.26.2013, 09:37am
A new synthetic type of biofuel created by mixing and matching bits of DNA from different organisms could one day replace diesel and jet fuel
Broadband, Polarization-Sensitive Photodetector Based on Optically-Thick Films of Macroscopically Long, Dense, and Aligned Carbon Nanotubes
[Report] InP Nanowire Array Solar Cells Achieving 13.8% Efficiency by Exceeding the Ray Optics Limit
   
Allele News Release
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Allele Biotech Seminar at UCR Dept of Chem Tomorrow
Wednesday, 06.12.2013, 10:59am
Allele's CEO Dr. Jiwu Wang gave a seminar at UCR Department of Chemistry tomorrow at noon, host Prof Huiwang Ai, "mRNA-iPSC, Nanobodies, and the Brightest Monomeric Fluorescent Protein--from a perspective of doing excellent research in a small business setting".
Allele Publishes mNeonGreen as the Brightest Monomeric Fluorescent Protein for Super-resolution Imaging
Allele Biotechnology Initiates Project On Scaled Manufacturing Of Induced Pluripotent Stem Cells And Differentiation
 
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  News in Pictures

Dr. Nathan Shaner is the subject of the Author File in this months issue of Nature Methods. Allele is now offering licensing opportunities for mNeonGreen to benefit more researchers than any other FP.
http://www.allelebiotech.com/categories/Fluorescent-Proteins/Sublicensing/

::| Hot News
Genomes can be lean and mean
Single cell techniques isolated resident T cells in asymptomatic Herpes infection
The shaping and functional consequences of the microRNA landscape in breast cancer
Author File: Nathan Shaner, the Scintillon Institute
Making fuel from engineered bacteria
Proteomics: marked for depth
Anatomical localization, gene expression profiling and functional characterization of adult human neck brown fat
Gene-pair expression signatures reveal lineage control
Raising standards
A CRISPR/Cas system mediates bacterial innate immune evasion and virulence